Reverend Bayes meets Darwin: Bayesian inference of phylogeny and its impact on evolutionary biology
نویسندگان
چکیده
The probability of a high roll is larger for the biased dice than for the fair dice. Suppose that you draw a die at random from the box and roll it twice, observing a four on the first roll and a six on the second roll. What is the probability that the die is biased? A Bayesian analysis combines ones prior beliefs about the probability of a hypothesis with the likelihood. The likelihood is the vehicle that carries the information about the hypothesis contained in the observations. In this case, the likelihood is simply the probability of observing a four and a six given that the die is biased or fair. Assuming independence of the tosses, the probability of observing a four and a six is
منابع مشابه
Bayesian inference of phylogeny and its impact on evolutionary biology.
As a discipline, phylogenetics is becoming transformed by a flood of molecular data. These data allow broad questions to be asked about the history of life, but also present difficult statistical and computational problems. Bayesian inference of phylogeny brings a new perspective to a number of outstanding issues in evolutionary biology, including the analysis of large phylogenetic trees and co...
متن کاملInference for the Proportional Hazards Family under Progressive Type-II Censoring
In this paper, the well-known proportional hazards model which includes several well-known lifetime distributions such as exponential,Pareto, Lomax, Burr type XII, and so on is considered. With both Bayesian and non-Bayesian approaches , we consider the estimation of parameters of interest based on progressively Type-II right censored samples. The Bayes estimates are obtained based on symmetric...
متن کاملPhylogeny and morphological traits evolution of Astragalus sects. Acanthophace and Aegacantha in Iran on the basis of nrDNA ITS and rpl32-trnLUAG sequences
In this study, phylogenetic relationships and evolutionary trends of morphological characters of Astragalus sects. Acanthophace and Aegacantha were studied using nrDNA ITS and rpl32-trnLUAG datasets while Astragalus stocksii was selected as the outgroup. The phylogenetic results indicated the non-monophyly of A. sect. Acanthophace in its current circumscription due to the distant exclusion of A...
متن کاملThe Phylogeny of Calligonum and Pteropyrum (Polygonaceae) Based on Nuclear Ribosomal DNA ITS and Chloroplast trnL-F Sequences
This study represents phylogenetic analyses of two woody polygonaceous genera Calligonum and Pteropyrum using both chloroplast fragment (trnL-F) and the nuclear ribosomal internal transcribed spacer (nrDNA ITS) sequence data. All inferred phylogenies using parsimony and Bayesian methods showed that Calligonum and Pteropyrum are both monophyletic and closely related taxa. They have no affinity w...
متن کاملMolecular phylogeny of Scutellaria (Lamiaceae; Scutellarioideae) in Iranian highlands inferred from nrITS and trnL-F sequences
Scutellaria with about 360 species is one of the largest genera of Lamiaceae. The Iranian highlands accommodate about 40 Scutellaria spp., and is considered as one of the main centers of diversity of the genus. Here, we present a phylogenetic study for 44 species of Scutellaria especially from Iranian highlands, representing major subgeneric taxa, based on nuclear rib...
متن کامل